We study the generation of neutrino masses and mixing in supersymmetric R-parity violating models containing two pairs of Higgs doublets. In these models, new RPV terms HHE arise in the superpotential, as well as new soft terms. Such terms give new contributions to neutrino masses. We identify the different parameters and suppression/enhancement factors that control each of these contributions, and could therefore constrain the parameter space of this class of models.